News

2023

April 11, 2023

GRNsight v6.0.7 Released

For a description of the new features, please see the About page.

March 17, 2023

Loyola Marymount University Undergraduate Research Symposium

Sarron A. Tadesse and Ngan N. Tran presented a poster about GRNsight at the 15th Annual Loyola Marymount University Undergraduate Research Conference. Abstract and poster by Ahmad R. Mersaghian, Sarron A. Tadesse and Ngan N. Tran entitled, "Improved Functionality of GRNsight 6.0: a Web Application for Visualizing Gene Regulatory Network Models".

2022

December 7, 2022

GRNsight v6.0.4 Released

For a description of the new features, please see the About page.

September 7, 2022

GRNsight v6.0.0 Released

For a description of the new features, please see the About page.

March 19, 2022

Loyola Marymount University Undergraduate Research Symposium

Onariaginosa O. Igbinedion presented a poster about GRNsight at the 14th Annual Loyola Marymount University Undergraduate Research Conference. Abstract and poster by Onariaginosa O. Igbinedion entitled, "New Databases and Export Features for GRNsight: a Web Application for Visualizing Models of GRNs".

March 19, 2022

Loyola Marymount University Undergraduate Research Symposium

Ahmad R. Mersaghian and Sarron A. Tadesse presented a poster about GRNsight at the 14th Annual Loyola Marymount University Undergraduate Research Conference. Abstract and poster by Ahmad R. Mersaghian and Sarron A. Tadesse entitled, "A New Gene Expression Dataset for GRNsight: a Web Application for Visualizing Gene Network Models".

January 18, 2022

GRNsight v5.1.0 Released

For a description of the new features, please see the About page.

2021

September 8, 2021

GRNsight v5.0.0 Released

For a description of the new features, please see the About page.

March 19, 2021

Loyola Marymount University Undergraduate Research Symposium

Onariaginosa O. Igbinedion, Ian M. Green and Ahmad R. Mersaghian presented a poster about GRNsight at the 13th Annual Loyola Marymount University Undergraduate Research Conference. Abstract and poster by Onariaginosa O. Igbinedion, Ian M. Green and Ahmad R. Mersaghian entitled, "More Robust Testing of Data and UI for GRNsight: a Web Application for Visualizing Models of GRNs".

2019

June 7, 2019

GRNsight v4.0.0 Released

For a description of the new features, please see the About page.

2018

June 1, 2018

GRNsight v3.1.0 Released

For a description of the new features, please see the About page.

April 29, 2018

GRNsight v3.0.0 Released

For a description of the new features, please see the About page.

January 22, 2018

GRNsight v2.3.0 Released

For a description of the new features, please see the About page.

2017

June 2, 2017

GRNsight v2.1.11 Released

For a description of the new features, please see the About page.

May 10, 2017

GRNsight v2.0.20 Released

For a description of the new features, please see the About page.

2016

September 12, 2016

GRNsight article published in PeerJ Computer Science

Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi. (2016) GRNsight: a web application and service for visualizing models of small- to medium-scale gene regulatory networks. PeerJ Computer Science 2:e85 https://doi.org/10.7717/peerj-cs.85

August 18, 2016

Revision to article describing GRNsight is posted online in PeerJ Preprints

Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi. (2016) GRNsight: a web application and service for visualizing models of small- to medium-scale gene regulatory networks. PeerJ Preprints 4:e2068v2 https://doi.org/10.7287/peerj.preprints.2068v2

August 12, 2016

GRNsight v1.18.1 Released

For a description of the new features, please see the About page.

July 9, 2016

GRNsight and GRNmap presented at BOSC and ISMB

Kam D. Dahlquist gave a lightning talk and poster about GRNsight and GRNmap at the Bioinformatics Open Source Conference (BOSC) 2016 held on July 8-9, 2016 in Orlando, Florida. Click here to view the complete BOSC program with abstracts. The poster was also presented at the Intelligent Systems for Molecular Biology Conference (ISMB) immediately following BOSC on July 10-12, 2016. Click here to view the poster on F1000Research. Click here to view the slides on F1000Research.

May 23, 2016

Article describing GRNsight is posted online in PeerJ Preprints

Kam D. Dahlquist, John David N. Dionisio, Ben G. Fitzpatrick, Nicole A. Anguiano, Anindita Varshneya, Britain J. Southwick, Mihir Samdarshi. (2016) GRNsight: a web application and service for visualizing models of small- to medium-scale gene regulatory networks. PeerJ Preprints 4:e2068v1 https://doi.org/10.7287/peerj.preprints.2068v1

April 4, 2016

Experimental Biology

Anindita Varshneya and Mihir Samdarshi presented a poster about GRNsight at the Experimental Biology conference in San Diego. Abstract and poster by Anindita Varshneya and Mihir Samdarshi entitled, "Test-driven development improves GRNsight: a web application for visualizing models of gene regulatory networks".

March 19, 2016

Loyola Marymount University Undergraduate Research Symposium

Anindita Varshneya and Mihir Samdarshi presented a poster about GRNsight at the 8th Annual Loyola Marymount University Undergraduate Research Conference. Abstract and poster by Anindita Varshneya and Mihir Samdarshi entitled, "Test-driven development improves GRNsight: a web application for visualizing models of gene regulatory networks".

2015

September 29, 2015

Article describing the sigmoidal dynamical model and penalized least squares approach used by our companion project, GRNmap, is published online in the Bulletin of Mathematical Biology

Dahlquist, K.D., Fitzpatrick, B.G., Camacho, E.T., Entzminger, S.D., and Wanner, N.C. (2015) Parameter Estimation for Gene Regulatory Networks from Microarray Data: Cold Shock Response in Saccharomyces cerevisiae. Bulletin of Mathematical Biology, 77(8), 1457-1492, published online September 29, 2015. DOI: 10.1007/s11538-015-0092-6.

August 10, 2015

GRNsight Reaches 1,000 Uploads

GRNsight reached a total of 1,000 file uploads on the website today.

June 24, 2015

GRNsight v1.12 Released

For a description of the new features, please see the About page.

April 28, 2015

GRNsight v1.10.4 Released

For a description of the new features, please see the About page.

April 25, 2015

West Coast Biological Sciences Undergraduate Research Conference

Nicole Anguiano and Anu Varshneya presented a poster about GRNsight at the 40th Annual West Coast Biological Sciences Undergraduate Research Conference. Poster by Nicole Anguiano and Anindita Varshneya entitled, "Improvements to GRNsight: a Web Application for Visualizing Models of Gene Regulatory Networks".

April 13, 2015

Upload Counter Implemented

We added Google Analytics tracking to count file uploads.

March 21, 2015

LMU Undergraduate Research Symposium

The joint LMU Bioinformatics and Biomathematics groups presented posters about GRNsight and GRNmap at the 7th Annual Loyola Marymount University Undergraduate Research Symposium on March 21, 2014.

  • Full symposium program
  • Poster by Nicole Anguiano and Anindita Varshneya entitled, "Improvements to GRNsight: a Web Application for Visualizing Models of Gene Regulatory Networks"
  • Poster by Juan Carrillo and Trixie Roque entitled, "Software Refactoring and Usability Enhancement for GRNmap, a Gene Regulatory Network Modeling Application"
  • Poster by Natalie Williams and K. Grace Johnson entitled, "Comparing the Dynamics of the Cold Shock Gene Regulatory Network in Yeast with a Random Network"

February 25, 2015

GRNsight v1.10 Released

For a description of the new features, please see the About page.

February 3, 2015

GRNsight v1.8.2 Released

For a description of the new features, please see the About page.

January 31, 2015

Southern California Systems Biology Conference

Dr. Kam D. Dahlquist gives a presentation about GRNsight and GRNmap, and Nicole Anguiano gives a poster presentation about GRNsight at the 5th Annual Southern California Systems Biology Conference. Click here to view the slides and here to view the poster.

January 9, 2015

GRNsight v1.8 Released

For a description of the new features, please see the About page.

2014

November 22, 2014

Southern California Conference for Undergraduate Research

Nicole Anguiano and Anindita Varshneya give a poster presentation about GRNsight at the Southern California Conference for Undergraduate Research. Click here to view the poster.

October 14, 2014

GRNmap Available For Download

Our sister project, GRNmap: Gene Regulatory Network modeling and parameter estimation, has an executable available for download.

October 6, 2014

GRNSight v1.6 Released

For a description of the new features, please see the About page.

September 18, 2014

Page View Counter Implemented

We added Google Analytics tracking to count web page views.

August 25, 2014

GRNsight v1.4 Released

For a description of the new features, please see the About page.

July 24, 2014

GRNSight v1.2 Released

For a description of the new features, please see the About page.

May 8, 2014

CMSI 402 Senior Project Presentation

Britain Southwick gives a presentation about GRNsight at the Loyola Marymount University CMSI 402 Senior Project Presentations event. Click here to view the slides.

March 29, 2014

Loyola Marymount University Undergraduate Research Symposium Presentation

Britain Southwick and Nicole Anguiano give a presentation about GRNsight at the Loyola Marymount University 6th Annual Undergraduate Research Symposium. Click here to view the slides.

March 20, 2014

The GRNsight server starts running.


January 23, 2014

The GRNsight Project is established on GitHub.